A termite genome reference and its Bowtie2 index

This dataset contains a fasta file and its Bowtie2 index. The fasta file includes publicly available genomes of 5 termite species, namely <em>Zootermopsis nevadensis </em>(Terrapon, N., Li, C., Robertson, H. M., Ji, L., Meng, X., Booth, W., ... &amp; Liebig, J. (2014). Molecular traces of alternative social organization in a termite genome. Nature communications, 5(1), 1-12.), <em>Cryptotermes secundus</em> (Harrison, M. C., Jongepier, E., Robertson, H. M., Arning, N., Bitard-Feildel, T., Chao, H., ... &amp; Bornberg-Bauer, E. (2018). Hemimetabolous genomes reveal molecular basis of termite eusociality. Nature ecology &amp; evolution, 2(3), 557-566.), <em>Macrotermes natalensis</em> (Poulsen, M., Hu, H., Li, C., Chen, Z., Xu, L., Otani, S., ... &amp; Zhang, G. (2014). Complementary symbiont contributions to plant decomposition in a fungus-farming termite. Proceedings of the National Academy of Sciences, 111(40), 14500-14505.), <em>Coptotermes formosanus</em> (Draft genome sequence of the termite, Coptotermes formosanus: Genetic insights into the pyruvate dehydrogenase complex of the termite) and <em>Reticulitermes speratus </em>(Shigenobu, S., Hayashi, Y., Watanabe, D., Tokuda, G., Hojo, M. Y., Toga, K., Saiki, R., Yaguchi, H., Masuoka, Y., Suzuki, R., Suzuki, S., Kimura, M., Matsunami, M., Sugime, Y., Oguchi, K., Niimi, T., Gotoh, H., Hojo, M. K., Miyazaki, S., … Maekawa, K. (2022). Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus: Gene duplication facilitates social evolution. Proceedings of the National Academy of Sciences, 119(3), e2110361119.). These genomic sequences have been classified with Kraken 2 v2.1.2 (Wood, D. E., Lu, J., &amp; Langmead, B. (2019). Improved metagenomic analysis with Kraken 2. Genome Biology, 20(1), 1–13 and Wood, D. E., &amp; Salzberg, S. L. (2014). Kraken: Ultrafast metagenomic sequence classification using exact alignments. Genome Biology, 15(3).) to remove all microbial sequences. This cleaned fasta file was indexed using the bowtie2-build command from Bowtie2 (Langmead, B., &amp; Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9(4), 357–359.) and can be used to perform alignments.