Data from: Population structure, genetic connectivity, and adaptation in the Olympia oyster (Ostrea lurida) along the west coast of North America

VCF file of full, filtered datasetVCF file of 13,424 single nucleotide polymorphisms (SNPs) derived from genotype-by-sequencing of 117 Olympia oysters (Ostrea lurida) sampled across 19 populations, filtered for a minor allele frequency of 2.5% and no more than 75% missing data.OL-c85t10-x45m75-maf025.recode.vcfFasta file of outlier GBS lociFasta file of 129 genotype-by-sequencing loci potentially involved in local adaptation, as determined by at least two methods (pcadapt, OutFLANK, or BayeScan). The 18 loci with positive BLASTx hits are annotated.OutlierLoci.fastaVCF file of putative neutral SNPsVCF file of 13,073 putative neutral SNPs derived from genotype-by-sequencing data of 117 Olympia oysters (Ostrea lurida) sampled across 19 populations. Obtained by filtering the full dataset of any SNP found on a locus containing at least one outlier SNP.OL-c85t10-x45m75-maf025-neutI2.recode.vcfVCF file of putative outlier SNPsVCF file of 235 putative adaptive SNPs derived from genotype-by-sequencing data of 117 Olympia oysters (Ostrea lurida) sampled across 19 populations.OL-c85t10-x45m75-maf025-outI2Union.recode.vcfSample MetadataMetadata information for the 117 Olympia oysters (Ostrea lurida) included in the VCF files in this repository. STRATA: population assignment in analyses; LOCATION: sampling location name; REGION: assigned phylogeographic region; LATITUDE and LONGITIDE of sampling site; LIBRARY: the sequencing run of the sampleOL-c85t10-x45.strataOutfiles of ipyrad assemblyOutfiles produced by ipyrad after assembly of genotype-by-sequencing data. .vcf is used as the input for additional, downstream filtering. _stats.txt provides statistics over the course of the ipyrad run.OL-s7filt45-c85-t10_outfiles.zipExample parameter file for EEMSA parameter file for running EEMS (Estimated Effective Migration Surfaces), including parameter values for setting the variance of the proposal distributions.params-nDemes600-SkI-ch3.iniParameters for ipyrad assemblyParameters used in ipyrad for assembling genotype-by-sequencing data.params-OL-s7filt45-c85-t10.txtHabitat file for EEMSThe .outer file required by EEMS(Estimated Effective Migration Surfaces), which outlines the available habitat for the analysis using GPS coordinates.habitat.outer