TFActProfiler

This Zenodo record contains the outputs of TFActProfiler and the source datasets used to create it: ChIP-Atlas, CollecTRI, and CellOracle. TFActProfiler: Sugimoto, H., Tsuyuzaki, K., Zou, Z., Oki, S., Ohta, T., & Kawakami, E. (2025). Uncertainty-aware transcription factor activity and perturbation inference without additional training. bioRxiv, 2025-10. ChIP-Atlas: Zou,Z., Ohta,T. and Oki,S. (2024) ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data. Nucleic Acids Res., 52, W45–W53. CollecTRI: Müller-Dott,S., Tsirvouli,E., Vazquez,M., Ramirez Flores,R.O., Badia-I-Mompel,P., Fallegger,R., Türei,D., Lægreid,A. and Saez-Rodriguez,J. (2023) Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities. Nucleic Acids Res., 51, 10934–10949. CellOracle: Kamimoto,K., Stringa,B., Hoffmann,C.M., Jindal,K., Solnica-Krezel,L. and Morris,S.A. (2023) Dissecting cell identity via network inference and in silico gene perturbation. Nature, 614, 742–751.