Whole genome and metagenomic sequencing of isolates and samples from a patient who tested positive for carbapenem-resistant organisms following stem cell transplant Genome sequencing and assembly. Carbapenem-resistant Enterobacteriaceae

This study follows the emergence of carbapenem resistance, its spread across five strains of bacteria and persistence for over a year in a single patient undergoing HSCT. Resistance was linked to a pair of plasmids with strong similarity to previously described reference sequences.