Additional file 9 of Frag’n’Flow: automated workflow for large-scale quantitative proteomics in high performance computing environments
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Additional file 9: File S2. (A: sheets 1 to 4) Comparison of peptide and protein level outputs generated using the FragPipe GUI and the Nextflow-based Frag’n’Flow pipeline. (B: sheets 5 to 6) Protein level intensity matrices from Frag’n’Flow and quantms, used in benchmarking analysis.
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2026-01-04



