Additional file 4: of QTL and candidate genes associated with leaf anion concentrations in response to phosphate supply in Arabidopsis thaliana

List of all candidate genes mapped in the HapMap/GWAS population for anion concentration under phosphate sufficient (+Pi) and deficient (−Pi) treatments. PHO = leaf Pi concentration, PUE = Pi use efficiency, IP6 = leaf phytate concentration, Cit = leaf citrate concentration, Nit = leaf nitrate concentration, Oxa = leaf oxalate concentration, SUL = leaf sulphate concentration. MAF is the minor allele frequency. -log10(P) indicates the significance level of association. β indicates the phenotypic effect of a SNP in (+Pi) or (−Pi) with positive values indicating a positive effect on the trait value from the Col allele. Chromosome numbers are indicated (Chr.). The SNP positions on each chromosome are given, in kilo basepairs (kb). Both SNP position and description is based on TAIR v.10 ( www.arabidopsis.org ). Genes found to be in linkage disequilibrium (LD), (LD > 0.3) or within 10 kb on both sides of the significant SNP if no LD is found, are listed. (XLSX 38 kb)