MetaCoOc pre-formatted input files

Pre-formatted files for use in MetaCoOc. Key components of MetaCoOc are: Community profiles (presence/absence or abundance) derived from Metagenomes (e.g. those generated by singleM and hosted in Sandpiper) Metadata about the metagenome samples e.g. the metadata submitted in NCBI SRA metagenome submissions Parsing NCBI SRA Metadata We adapted the parsing workflow was adapted from public_sequencing_metadata_corrections. The process is detailed in the README.md of metacooc Formatting Sandpiper Data We downloaded the community profiles in Sandpiper from Zenodo The community profiles were formatted into Ingredients classes using MetaCoOc. The pickles of these are saved here. Changelog version 1.0.1 Underlying architecture of the Ingredients class was updated and necessitates a fresh upload. Biome distribution data can also be accessed from the Ingredients class now version 1.0.0 In-line with the update and release of Sandpiper1.0.0 - files in this repository were updated and versioning introduced