Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)

Nuclear and plastid datasets and phylogenomic workflow associated to "Genomic Incongruence Accompanies the Evolution of Flower Symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)", published in Frontiers in Plant Science 15:1340056.This compressed file (poppy_repo.zip) contains a markdown readme file (poppy_readme.md) describing the phylogenomic workflow followed, as well as two dataset folders (poppy_nuc and poppy_pl) divided into four (aln_nuc, gtr_nuc, sptr_nuc, and chrono_nuc) and three (aln_pl, sptr_pl, and chrono_pl) subfolders, respectively.The nuclear folder (poppy_nuc) comprises shrunk and trimmed alignments (aln_nuc), ML gene trees (gtr_nuc), coalescent species trees (sptr_nuc), and a time tree (chrono_nuc).The plastid folder (poppy_pl) comprises shrunk and trimmed alignments (aln_pl), a concatenated ML species tree (sptr_pl), and a time tree (chrono_pl).The research article is available at https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2024.1340056 (doi: 10.3389/fpls.2024.1340056).