Additional file 1 of Candidate markers for enhanced host response to PRRS have scarce adverse effects on pigs’ growth and production

Supplementary Material 1: Table S1.Description of primers and probes used for genotyping the studied genetic markers. 1Position in the pig genome assembly Sscrofa 11.1. Table S2 Least square means for the analysed production traits by the GBP5_rs340943904 (G > T) genotype. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Table S3, Least square means for the analysed production traits by the GBP6_rs322187731 (A > G) genotype. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Table S4 Least square means for the fatty acid composition (%) of gluteus medius by the GBP1_rs80800372 (A > G) genotype. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Table S5 Least square means for the analysed production traits by the CD163_rs1107556229 (G > A) genotype. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Table S61 the substitution effect of C for A. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Bold indicates statistical significance. Within each trait, means with different superscripts (a,b) indicate significant differences (p-value lower than the Bonferroni threshold 0.007) between the genotypes. Table S7 Least square means for the analysed production traits by the TAP1_rs80928141 (C > T) genotype. 1 the substitution effect of C for T. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Bold indicates statistical significance. Within each trait, means with different superscripts (a,b) indicate significant differences (p-value lower than the Bonferroni threshold 0.007) between the genotypes. Table S8 Least square means for the analysed production traits by the genotypes of the 275-bp insertion at MX1. 1The additive effect of the 275-bp insertion. SFA: saturated fatty acids, C16:0: palmitic acid, C18:0: stearic acid, MUFA: monounsaturated fatty acids, C16:1n-7: palmitoleic acid, C18:1 refers to the sum of the vaccenic (C18:1n-7) and the oleic (C18:1n-9) acids, PUFA: polyunsaturated fatty acids, C18:2n-6: linoleic acid, C18:3n-3: linolenic acid, C20:4n-6: arachidonic acid, ns: not significant. Bold indicates statistical significance. Within each trait, means with different superscripts (a,b) indicate significant differences (p-value lower than the Bonferroni threshold 0.007) between the genotypes.