Additional file 9 of Chromatin loop anchors contain core structural components of the gene expression machinery in maize

Additional file 9. replicate 1 chromatin loop anchor annotation and counts for each feature listed below. (seqid) Chromosomal assignment for loop anchor; (start) (end) Coordinates (in bps) of start and end, respectively, of chromatin loop anchor; (locus) name and loop assignment of anchor; (bare) presence or absence of any of the features listed below on anchor (0 = at least one feature present; 1 = no feature present). The following features are annotated: (ef) (uf) expressed (ef) or unexpressed (uf) gene with nearest open chromatin peak >2Kbps away from gene; (en3) (un3) expressed (en3) or unexpressed (un3) gene with nearest open chromatin peak <2Kbps downstream from gene; (en5) (un5) expressed (en5) or unexpressed (un5) gene with nearest open chromatin peak <2Kbps upstream from gene; (eo) (uo) expressed (eo) or unexpressed (uo) gene with nearest open chromatin peak overlapping with gene; (mp) open chromatin peak overlapping an anchor; (mpfe) open chromatin peak overlapping an anchor but with the nearest expressed gene >2Kbps away from the peak.