Framework And Resource For More Than 11,000 Gene-Transcript-Protein-Reaction Associations In Human Metabolism

Eight versions of COBRA-compliant SBML files are available for each Recon 2M.1 and Recon 2M.2 depending on the use of: MNXref versus BiGG IDs; Entrez gene IDs (GPR associations) versus Ensembl transcript IDs versus RefSeq transcript IDs versus UCSC transcript IDs (TPR associations for the last three database IDs). 892 personal GEMs (only T-GEMs) built with Recon 2.2 1,784 personal GEMs (both P-GEMs and T-GEMs) built with Recon 2M.1 892 personal GEMs (only T-GEMs) built with Recon 2M.2 <strong>Publication</strong> Jae Yong Ryu¹, Hyun Uk Kim¹ &amp; Sang Yup Lee^*. Framework and resource for more than 11,000 gene-transcript-protein-reaction associations in human metabolism., <em>Proc. Natl. Acad. Sci. U.S.A.</em>, 2017, http://www.pnas.org/content/early/2017/10/23/1713050114