Scripts to Create Conda Environments in JupyterHub

This resource contains the following bash scripts which can be used by the user in any of the JupterHub instances accessible via the \"Open with\" functionality of HydroShare to create conda environment to run AORC related notebooks.

- setup_aorc_conda_env_cuahsi_jh.sh (This script should be used in CUAHSI JupyterHub to create a new conda environment called 'aorc')
- setup_aorc_conda_env_cybergis_jh.sh (This script should be used in CyberGIS Jupyter for Water) to create a new conda environment called 'aorc')
- environment.yml (This file contains the python modules needed to run the AORC notebooks - similar to requirements.txt file used with pip install). The above script files use this file to install the python modules specified in this yml file.
- delete_aorc_conda_env_cuahsi_jh,sh (This script can be run to delete the conda env 'aorc' in CUAHSI JupyterHub)
- delete_aorc_conda_env_cybergis_jh,sh (This script can be run to delete the conda env 'aorc' in CyberGIS Jupyter for Water)

How to update the aorc conda environment after it has been created?
Update here means installing additional python modules or upgrading to a newer version of any modules that is already installed in the aorc conda environment.
- Update the environment.yml file by adding new modules or updating the version of any modules in that file.
- In the JupyterHub instance, use a terminal and run the following 2 commands:
- conda activate aorc
- mamba env update -f environment.yml