Genotype Reproducibility Testing In Next-Generation Sequencing Data
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Code, log and results summary for testing the reproducibility of genotypes with three pairs of hemiclones in the Sussex LH<sub>M </sub><em>D.melanogaster </em>population sample. Discovery and genotyping of genomic sequence variants was done using GATK HaplotypeCaller, and Genomestrip. Numerical comparison of genotype calls within each pairs of hemiclone individuals was performed using GATK GenotypeConcordance. The pre-print manuscript for this data is available on biorxiv: "Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample" http://biorxiv.org/content/early/2016/10/17/081554 doi: http://dx.doi.org/10.1101/081554
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Zenodo创建时间：
2016-10-13
