A robust workflow to benchmark deconvolution of multi-omic data - Datasets

References profiles used for the generation of in silico mixes to benchmark deconvolution methods; Proportion matrix for the PaMIX dataset. (https://github.com/bcm-uga/DeconvBenchmark/) Dataset name Omic Tissue Number of cell types Publication BrCL1 DNAm/RNA Breast cancer 4 10.1016/j.celrep.2016.10.057 / 10.1371/journal.pcbi.1007510 PaCL1 DNAm/RNA PDAC 5 cf deconbench.github.io PaCL2 DNAm/RNA PDAC 9 10.1101/2024.11.08.622633 BlCL RNA Whole blood 6 10.1371/journal.pone.0118528 BrCL2 RNA Breast cancer 6 10.1186/s13059-023-03016-6 LuCL DNAm Lung cancer 9 10.1038/s41598-017-04248-w / 10.1371/journal.pone.0208915 PaMIX DNAm/RNA PDAC 9 10.1101/2024.11.08.622633