Additional file 1 of Parasitism by endoparasitoid wasps alters the internal but not the external microbiome in host caterpillars

Additional file 1: Table S1. zOTUs bacteria. Identification of bacterial zero radius operational taxonomic units (ZOTUs) according to the Silva v1.23 database and distribution over the investigated samples. Table S2. OTUs fungi. Identification of fungal operational taxonomic units (OTUs) according to the UNITE v6 database and distribution over the investigated samples. Table S3. 3 way ANOVA. Results of three way ANOVA of observed richness, Shannon diversity and densities for bacteria and fungi (caterpillars only). Table S4. Diversity bacteria. Diversity metrics for the bacterial communities. Table S5. Diversity fungi. Diversity metrics for the fungal communities. Table S6. Copy number bacteria. Determination of bacterial 16S rRNA gene copy numbers using qPCR. Table S7. Copy number fungi. Determination of fungal ITS copy numbers using qPCR. Table S8. Wolbachia detection. Occurrence of Wolbachia in studied samples, as determined using a specific Wolbachia PCR. Table S9. Plating results. Plating results: log number of colony forming units (cfu) per caterpillar (n = 2 per subgroup of health status). Table S10. Sample details. Sample details, including number of caterpillars used in this study. Table S11. Illumina primers V4. Primer design and sample-specific barcodes for the bacterial V4 region of the 16S rRNA gene. Table S12. Illumina primers ITS. Primer design and sample-specific barcodes for the fungal ITS region. Table S13. Mocks. Composition of mock communities.