Deep Learning Reveals Hidden Diversity of Synechococcus in the Coastal Water of China: Novel Clades and Their Ecological Insights

This dataset includes main data packages that support the study “Deep Learning Reveals Hidden Diversity of Synechococcus in the Coastal Water of China: Novel Clades and Their Ecological Insights.” Supplementary_Data.zip: Supplementary Data S1–S4, including reference information for collected Synechococcus ITS sequences (Data S1, Supplementary Data 1.csv), the starting dataset (Data S2, Supplementary Data 2.csv), the Syn_ITS database (Data S3, Supplementary Data 3.csv), and sampling station metadata (Data S4, Supplementary Data 4.csv). ChinaCoastalWater_ITS_Dataset.zip: Complete ITS sequence dataset obtained in this study, including all OTUs clustered at 97% sequence similarity, corresponding abundance files, and derived Synechococcus OTUs identified using Syn_Tool. Syn_Tool.zip: Syn_Tool software package developed in this study for identifying, classifying, and analyzing Synechococcus ITS sequences, along with pre-trained models, scripts, example data, and documentation. Detailed descriptions of all files and variables are provided in the accompanying README.md file.