Additional file 2 of Diverse functions associate with non-coding polymorphisms shared between humans and chimpanzees

Additional file 2: Table S1. List of candidate balanced shared polymorphisms (cbSPs), including subset of candidate trans-species shared polymorphisms(ctSP). Table S2. cbSPs and SNPs in high LD (R2 >= 0.8). Table S3. Summary table of the variants in this study, statistics, and associations. Table S4. Regulatory (VEP) association results for set of cbSPs and SNPs in high LD (R2 >= 0.8). Table S5. Regulatory region permutation test. Table S6. GTEx association results for set of cbSPs. The P-Value threshold reported here is 5e-5. Table S7. Gene Ontology (WebGestalt) performed on GTEx genes that contain cbSP eQTLs (Table S6) did not return any significan terms. Table S8. GTEx background probability of cbSPs. Bonferroni correction values represent: 2-passed the test, 1-p-value above 0.05, 0-not significant. Table S9. GWAS associations for cbSP and LD variants. The P-Value threshold reported here is 5e-8. Table S10. UKBiobank (geneAtlas and NealeLab) associations for cbSP and LD variants. The P-Value threshold reported here is 5e-8. Table S11. GWAS background probability of cbSPs. Bonferroni values represent: 2-passed the test, 1-p-value above 0.05, 0-not significant. Table S12. cbSPs found in association studies from gwasAtlas database. The P-Value threshold reported here is 5e-8.