Supplementary files for article "Use of Genome Scale Metabolic Reconstructions of Avian PathogenicEscherichia coli(APEC) phylotypes for the identification of lineage-specific metabolic pathways" by Long H, Mehat JW, Wu H, van Vliet AHM, La Ragione RM

These are supplementary files for the following submitted manuscript:Huijun Long, Jai W. Mehat, HuiHai Wu, Arnoud H. M. van Vliet and Roberto M. La Ragione. Use of Genome Scale Metabolic Reconstructions of Avian Pathogenic Escherichia coli (APEC) phylotypes for the identification of lineage-specific metabolic pathways.The following files are included in this record:1) Pan genome scale model for APEC.- APEC GEM.sfba2) Genome scale models for APEC phylogroups A, B1, B2, C and G.- APEC_GEM_SubModel_A.sfba- APEC_GEM_SubModel_B1.sfba- APEC_GEM_SubModel_B2.sfba- APEC_GEM_SubModel_C.sfba- APEC_GEM_SubModel_G.sfba3) Genome scale models for APEC phylogroups B2, C and G used to test the effects of 3-hydroxylphenoylacetic acid (3-HPAA) on growth.- SubModel_B2_3-HPAA.sfba- SubModel_C_3-HPAA.sfba- SubModel_G_3-HPAA.sfba4) media script files (pfile) for Carbon, Sulphate and Phosphate input.- media_biolog_c.pfile- media_biolog_p.pfile- media_biolog_s.pfile5) media script files (pfile) for the Genome scale models for APEC phylogroups B2, C and G.- media_SubModels.pfile6) media script files (pfile) for single gene knockout (potE and lysA).- KO_lysA.pfile- KO_potE.pfile