A list of base pairs in paromomycin/kanamycin binding site.

Only pairs observed for more than 5% of the trajectory time and in at least one trajectory are presented. WC, HG and Sugar denote the Watson-Crick, Hoogsteen and sugar edges of the nucleotides involved in the formation of hydrogen bonds. The asterisk indicates that it was impossible to assign the edge uniquely which happens if only one hydrogen bond is formed between the bases and involves the hydrogen positioned at the “corner” of the edges.