Proffitt et al (submitted, Mol Cell Endocrinol) AR MEME Tables.xlsx

This Excel file contains the results of a MEME (mixed effects model of evolution)  analysis (Murrell, B. et al., 2012) of  site-specific evolution of two teleost androgen receptors, ARα and ARβ.
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This analysis was conducted as part of a study (Proffitt, M.R., Liu, X., Ortlund, E.A., and Smith, G.T. "Evolution of androgen receptors contributes to species variation in androgenic regulation of communication signals in electric fish." (submitted 05/23, Molecular and Cellular Endocrinology).
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     Each tab contains the analysis for one of the two AR paralogs. The parameters are described below:   Site: The codon/nucleotide in the AR gene   
α: synonymous substitution rate at each site  
β-: non-synonymous substitution rate at each site for the negative/neutral evolution component  
p-: proportion of the tree evolving under negative/neutral evolution at each site   
β+: non-synonymous substitution rate at each site for the positive/neutral evolution component   
p+: proportion of the tree evolving neutrally or under positive selection at each site   
LRT: log-ratio test for p+&gt;0   
p-value: p-value for p+&gt;0   
Branches under selection: an approximation of the number of branches in the tree under positive selection at each site   
Branch length: Length of branches contributing to inference.   
MEME LogL: Log-likelihood for the site under the MEME model   
FEL LogL: Log-likelihood for the site under the fixed-effects likelihood model    
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