Proffitt et al (submitted, Mol Cell Endocrinol) AR MEME Tables.xlsx

This Excel file contains the results of a MEME (mixed effects model of evolution) analysis (Murrell, B. et al., 2012) of site-specific evolution of two teleost androgen receptors, ARα and ARβ. <br> This analysis was conducted as part of a study (Proffitt, M.R., Liu, X., Ortlund, E.A., and Smith, G.T. "Evolution of androgen receptors contributes to species variation in androgenic regulation of communication signals in electric fish." (submitted 05/23, Molecular and Cellular Endocrinology). <br> Each tab contains the analysis for one of the two AR paralogs. The parameters are described below: Site: The codon/nucleotide in the AR gene α: synonymous substitution rate at each site β-: non-synonymous substitution rate at each site for the negative/neutral evolution component p-: proportion of the tree evolving under negative/neutral evolution at each site β+: non-synonymous substitution rate at each site for the positive/neutral evolution component p+: proportion of the tree evolving neutrally or under positive selection at each site LRT: log-ratio test for p+&gt;0 p-value: p-value for p+&gt;0 Branches under selection: an approximation of the number of branches in the tree under positive selection at each site Branch length: Length of branches contributing to inference. MEME LogL: Log-likelihood for the site under the MEME model FEL LogL: Log-likelihood for the site under the fixed-effects likelihood model <br>