Data for: Comparative gene expression analysis of differentiated terminal and lateral haustoria of the obligate root parasitic plant Phelipanche ramosa (Orobanchaceae)

R script and count tables for comparative analysis of transcript data of Phelipanche ramosa (WOSR ecotype), organs/tissue: adventitious roots, lateral haustoria, terminal haustorium

- 20230329_BrunLemanWicke_pairwiseComp_DEGanaysis.R: R code for DEG analysis, overrepresentation analysis, and all data/results plots
- GO_terms_description.txt: translation table for GO terms
- enrich_sig_GO.xlsx: Lists of significantly enriched GO terms from DEG analysis, sorted by GO category
- trinotate_annotation_report.xls: functional annotation of the Phelipanche reference transcriptome (OrAe-BC5 build, PPGP: http://ppgp.huck.psu.edu/download.php) used for mapping
- trinotate_report_gene_ontology_with_parents.xls: GO term assignment for unigene annotation of the Phelipanche reference transcriptome build
- rsem.gene.counts.matrix: Read count table from mapping individual datasets to the reference transcriptome build; read counts are given per reference unigene ID