Dataset: Coral high molecular weight carbohydrates support opportunistic microbes in bacterioplankton from an algae-dominated reef

This dataset contains raw data for figures 5 (genus-level microbial community compositions) and 6 (predicted metabolic functions, pathway types), R code for PERMANOVAs (Table 3), DESeq2 and random forest (rfpermute) analyses, and R code to generate figures 5, 6b, S5 & S6.

Overview of .txt files:

Genus_16S_Counts.txt

Counts data used for DESeq2 analysis (Fig. 5c).

Genus_16S_relAbund.txt

Relative abundance data used for Fig. 5a, b & d.

MicFunPred_MetaCyc_types_all

Predicted pathway abundance data for all pathway types used for DESeq2 (Fig. 6b), PERMANOVA (Table 3) and column clustering of Fig. 6b.

MicFunPred_MetaCyc_AA_types.txt

Amino acids (Fig. 6b)

MicFunPred_MetaCyc_CH_types.txt

Carbohydrates (Fig. 6b)

MicFunPred_MetaCyc_EM _types.txt

Energy metabolism (Fig. 6b)

MicFunPred_MetaCyc_FAL _types.txt

Fatty acids and lipids (Fig. 6b)

MicFunPred_MetaCyc_SM _types.txt

Secondary metabolism (Fig. 6b)

MicFunPred_MetaCyc_OBiosyn _types.txt

Other biosynthesis (Fig. S6)

MicFunPred_MetaCyc_ODeg _types.txt

Other degradation (Fig. S6)