Additional file 6 of Detecting haplotype-specific transcript variation in long reads with FLAIR2

Additional file 6: Table S1. Performance of transcript detection tools on 1D nanopore SIRVs. Table S2. Performance of transcript detection tools on R2C2 nanopore SIRV-Set4 from the LRGASP Consortium. Performance of Bambu, IsoQuant, Lyric, Mandalorion, and TALON were obtained from Pardo-Palacios et al. Table S3. HST-containing genes in hybrid Castaneus x Mouse 129 identified from this study. Table S4. GO terms associated with HSTs found in hybrid Castaneus x 129 mouse data. Table S5. DESeq2 output table of differentially expressed genes upon KD of ADAR in H1975. Analysis is from Illumina sequencing data. Table S6. Oligo-dT indexes used with R2C2 sequencing.