Additional file 1 of Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance

Additional file 1: Table S1. Description of read data, quality control and GC content of UFGE 4033 and 06–245-03 gerbera breeding lines. Table S2. Functional annotation of gerbera transcripts performed using Blast2GO. Table S3. Mapping statistics of UFGE 4033 and 06–245-03 samples to de novo transcriptome assembly using Samtools and Qualimap. Samples R1, R2 and R3 represent three biological replicates of UFGE 4033 and S1, S2 and S3 represent three biological replicates of 06–245-03. Table S4. List of gerbera transcripts from powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines from the differential expression analysis of gerbera transcriptome. Table S5. List of gerbera transcripts from powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines functionally annotated as disease resistance in gerbera transcriptome. Table S6. List of Mildew locus O (MLO)-like transcripts present in the gerbera transcriptome constructed using powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines. Table S7. Single nucleotide polymorphisms identified between powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) gerbera breeding lines using RNA-seq and SAMtools, FreeBayes and GATK pipelines. Table S8. Statistics on simple sequence repeats identified in gerbera transcriptome using powdery mildew resistant (UFGE 4033) and susceptible (06–245-03) breeding lines and MISA tools. Table S9. Primers for RT-qPCR analysis of differentially up-regulated R-genes in gerbera for powdery mildew resistance.