Misclassification matrices for haplotype reconstruction error.
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Misclassification probabilities: ��kl(m) = P(Cim* = K|Him = l), k,l = 0,1,2, m = 1,��, M, for subject i; sensitivity: Snm = P(Cim*>0|Him>0); specificity: Spm = P(Cim* = 0|Him = 0); true or reconstructed haplotypes' probabilities (i.e. probabilities that a subjects has k number of copies of haplotype hm): ��k(m) = P(Him = k), k = 0,1,2; ��k(m)* = P(Cim* = k); true or reconstructed number of copies of hm: Him or Cim*, respectively.
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2015-12-02
