Dorsal cell movements during zebrafish gastrulation includes a combination of epiboly, involution, and convergence and extension along the embryonic axis. Note that videos CIL 11818, 11819, and 11820
RNA-seq data of EVL and non-EVL cells FACS sorted by the expression of GFP from the krt18 promoter (EVL cells). The analysis was performed with the aim to understand the global gene expression pattern
This is 3D matrix data representing the shape of the zebrafish embryo (shield stage) and is required for analysis data from Junker et al. using tomoseqr.
RNA was isolated from Danio embryo cells using the TRIzol (Invitrogen) reagent by following the company manual. For all samples the RNA integrity was checked using an Agilent Bioanalyzer 2100. All sam
Coordinated gene expression is fundamental for cell identity, development and differentiation, and relies on a highly organized genome. Our central goal is to determine when and how higher-order 3D ch
