Additional file 2 of Comparison of meiotic transcriptomes of three maize inbreds with different origins reveals differences in cell cycle and recombination

Additional file 2: Supplementary Table 1. Percent of aligned reads for the B73, Mo17, and CML228 meiocytes to B73 v5 reference, Mo17 v1 reference, and CML228 v1 reference. Supplementary Table 2. Genes that had a reads per kilobase million (RPKM) value greater than 2 and were present in B73, Mo17, and CML228 meiocytes aligned to each of their corresponsive genomes (the B73 v5 reference, Mo17 v1 reference, and the CML228 v1 reference). Values shown for each sample were Z-scores, indicating levels of gene expression. Supplementary Table 3. Common meiosis-related genes detected in temperate maize lines B73 and Mo17 and the tropical maize line CML228 male meiocytes. Values shown for each sample were Z-scores, indicating levels of gene expression. Supplementary Table 4. Significantly differentially expressed genes in "cell cycle" gene ontology category: their expression levels (shown in Z-scores) and functions. Supplementary Table 5. Genes that had a reads per kilobase million (RPKM) value greater than 2 of B73, Mo17, and CML228 meiocytes aligned to the B73 v5 reference genome. Values shown for each sample were Z-scores, indicating levels of gene expression. Supplementary Table 6. Genes that had a reads per kilobase million (RPKM) value greater than 2 of B73, Mo17, and CML228 meiocytes aligned to the Mo17 v1 reference genome. Values shown for each sample were Z-scores, indicating levels of gene expression. Supplementary Table 7. Genes that had a reads per kilobase million (RPKM) value greater than 2 of B73, Mo17, and CML228 meiocytes aligned to the CML228 v1 reference genome. Values shown for each sample were Z-scores, indicating levels of gene expression.