Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse cerebellar granule neurons (jrc_mus-granule-neurons-3)
收藏DataCite Commons2025-02-14 更新2025-04-16 收录
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https://janelia.figshare.com/articles/dataset/Refined_automatic_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_mouse_cerebellar_granule_neurons_jrc_mus-granule-neurons-3_/26506516/1
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<br><b>Segmentation description</b>: Nuclei segmentations in ACQUISITIONID using Cellpose 3.0.9 with cursory manual corrections.<b>Software</b>: Cellpose 3.0.9<b>Software DOI</b>: https://doi.org/10.1038/s41592-022-01663-4<b>Prediction Duration (seconds)</b>: 349.56<b>GPU</b>: NVIDIA TITAN RTX<b>RAM</b>: 251.0 GiB<b>Label voxel size (nm)</b>: 128 x 128 x 128 (x, y, z)<b>Reconstructed data dimensions (µm)</b>: 31.2 x 12 x 20.19 (x, y, z)<b>Classes annotated</b>: Nucleus<b>Source dataset (EM) ID</b>: jrc_mus-granule-neurons-3<b>Source dataset (EM) voxel size (nm)</b>: 4 x 4 x 5.37 (x, y, z)<b>Source dataset (EM) data dimensions (µm)</b>: 31.2 x 12 x 20.19 (x, y, z)<b>Source dataset (EM) DOI</b>: https://doi.org/10.25378/janelia.24222892<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-granule-neurons-3/jrc_mus-granule-neurons-3.zarr/recon-2/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-granule-neurons-3
提供机构：
Janelia Research Campus
创建时间：
2025-02-14
