Additional file 3 of MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile

Additional file 3: Metadata utilized for the validation of the MGS2AMR pipeline. ARG: The list of all antimicrobial resistance genes (ARG) evaluated by the pipeline. Backgrounds: Information on metagenomic sequencing data from healthy individuals, sourced from previously published studies (control samples). These data serve as the background for the 1200 samples generated for validation. GeneLinks: The linkage between genotypic information and the ARG tables. Genotypes: Details on the antimicrobial resistance genotypes of all bacteria used in the generation of the 1200 validation samples. Phenotypes: Information on the antimicrobial resistance phenotypes exhibited by all bacteria used in the generation of the 1200 validation samples. SampleInfo: Details on the sequencing data used in the generation of the 1200 validation samples. SEQ2MGS_1200: Input parameters for SEQ2MGS to generate the 1200 validation samples.