Additional file 2 of Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

Additional file 2: Table S1. Clustering HHD in LDHH regions. Table S1 shows all significant haplotypes of 20 markers (i.e., 266 HHD with frequency > 1%, P-value < 1.9 × 10−4 and deficit ≥ 75%). As described in the “Methods” section, the 266 HHD could be associated with 11 LDHH regions which are shown in green. Table S2. SNPs defining the LDHH regions. Table S2 gives the position of each SNP within LDHH regions according to the sheep reference genome v2.0 and v3.1, and the phased alleles of each deficient haplotype.