Supplementary Table S3 from BAP1 Loss Is Associated with DNA Methylomic Repatterning in Highly Aggressive Class 2 Uveal Melanomas

HyperMethvsDecGE_Cutoffs: All significantly hypermethylated probes from hypermethylated/downregulated genes (FDR < 0.05) with an absolute value (log2(RNA fold change)) > 1 and absolute value (methylation Delta Beta value) > 0.05 in Class 2 uveal melanomas compared to Class 1 uveal melanomas. HypoMethvsIncGE_Cutoffs: All significantly hypomethylated probes from hypomethylated/upregulated genes (FDR < 0.05) with an absolute value (log2(RNA fold change)) > 1 and absolute value (methylation Delta Beta value) > 0.05 in Class 2 uveal melanomas compared to Class 1 uveal melanomas. HyperMethvsDecGE: All significantly hypermethylated probes from hypermethylated/downregulated genes (FDR < 0.05) in Class 2 uveal melanomas compared to Class 1 uveal melanomas. HypoMethvsIncGE: All significantly hypomethylated probes significant hypomethylated/upregulated genes (FDR < 0.05) in Class 2 uveal melanomas compared to Class 1 uveal melanomas.