Genotypic description of the near isogenic lines (HIFs) used for QTL validation and significance of the observed segregating phenotypes (Marchadier, Hanemian, Tisné et al., 2018)

Each row represents a single HIF and the genotype of the F7 RIL it originates from is indicated along the chromosomes with RIL ID, markers and genotypic conventions from Publiclines http://publiclines.versailles.inra.fr/rils/index (i.e. 'A' = Col allele; 'B' = alternate parental allele; 'C' = heterozygous). The region highlighted in yellow is the segregating region that is tested in the HIF family through several fixed lines for each parental allele. For each of the 3 growth traits (Compactness29 = rosette compactness 29 days after sowing; PRA29 = Projected Rosette Area 29 days after sowing; RER16-29 = Relative rosette Expansion Rate between days 16 and 29 after sowing) in 2 conditions ('WW' = Well Watered / 'WD' = Water Deficit), whenever significant, the p-value of the comparison between allelic lines ('Pval') and the direction of the allelic effect ('sign' calculated as [Col-Xxx] where Xxx is the alternate parental allele) are indicated in the last columns of the table.