Single-cell and in situ spatial analyses reveal the diversity of newly born hematopoietic stem cells and of their niches – Source data 2 relative to Figs 3-5, S2-S8

.rds files for Chromium (Fig. 3, 5, S2-4, S7) and MARS-seq (Fig. 4, 5, S6, 8) datasets (plus the integrated Chromium / MARS-seq dataset, Fig. S5). The rds files contains only final the analyzed cells, used for all plotting and analysis (all low-quality cells and contaminant cells (see Methods) have been removed). For more detailed description of cells used for both sc-RNA-seq, see respective Method paragraphs. Each .rds file contains metadata that can be used to subset datasets by replicate, region, transgenic origin, cell types, phase… Only the datasets generated in the lab are made available in this repository. The 3 R scripts contain the codes used for the plotting of all figures. Sc-RNA-seq plots are in majority made using Seurat package functions. Additional plots are made with ggstatplots package or ggplot package and extensions. All library used are listed at the top of the scripts. The source data table file, classified with a unique tab for each figure panel, contains the data used conjointly with the .rds files to generate all plots using the aforementionned scripts.