lagrange_analysis_files

We applied the DEC model implemented in lagrange (Ree & Smith 2008) to obtain reconstructed ancestral areas at all internal nodes and infer probable dispersal scenarios over a distribution of dated mitonuclear phylogenies and dated nuclear species trees. The files implemented in lagrange include the geographic data for the mitonuclear data set and the nuclear species tree data set (.data files), the rate matrices for each time period within each paleodrainage hypothesis (.rm files), the distribution of mitonuclear phylogenies and species trees (.trees files) and the scripts to call each (.lg files).