aThe average k-mer depth of the variant portion of the assembly divided by the average k-mer depth of same-sized regions immediately on either side of the variant sequence. bThe frequency in the prese
Genome resequencing of B. subtilis mutant strain resulting from random recombinations between strains NCIB 3610 and RO-NN-1. Strain is mostly RO-NN-1 (~80%) but the rest includes randomly swapped snip
To infer recombination events in bacterial genomes, we used the maximum likelihood implementation of ClonalFrame, ClonalFrameML. MAGs (only high quality) were aligned with progressiveMauve, which is p