Data and results from Spage2vec: Unsupervised detection of spatial gene expression constellations

This repository contains spatial gene expression data from three in situ transcriptomic assayes together with analysis results from spage2vec manuscript. Acknowledgement: We thank Xiaoyan Qian, Simone Codeluppi and Jeffrey Moffitt for generating and sharing in situ sequencing [1], osmFISH [2] and MERFISH [3] datasets, respectively. And Jeongbin Park, Wonyl Choi for uploading osmFISH and MERFISH data to public repository. [1] Qian, Xiaoyan, et al. "Probabilistic cell typing enables fine mapping of closely related cell types in situ." Nature methods 17.1 (2020): 101-106. [2] Codeluppi, Simone, et al. "Spatial organization of the somatosensory cortex revealed by osmFISH." Nature methods 15.11 (2018): 932-935. [3] Moffitt, Jeffrey R., et al. "Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region." Science 362.6416 (2018): eaau5324.