Evolutionary changes of non-coding elements associated with transition of sexual mode in Caenorhabditis nematodes

The transition of the sexual mode occurs widely in animal evolution. In Caenorhabditis nematodes, androdioecy, a sexual polymorphism composed of males and hermaphrodites having the ability to self-fertilize, has evolved independently multiple times. Although regulatory elements in non-coding regions are likely involved in the evolution of hermaphroditism, their contribution to the transition of sexual mode is ambiguous. Here, we conducted a genome-wide analysis of conserved non-coding elements (CNEs) focusing on the evolution of hermaphroditism in Caenorhabditis nematodes. We found that, in androdioecious nematodes, mutations rapidly accumulated in CNEs neighboring genes associated with sexual traits. Expression analysis indicate that the identified CNEs are involved in spermatogenesis in hermaphrodites and associated with the transition of gene expression from dioecious to androdioecious nematodes. Finally, genome editing of a CNE neighboring laf-1 resulted in a change in its expressio..., , , # Evolutionary changes of non-coding elements associated with transition of sexual mode in Caenorhabditis nematodes

## Description of the data and file structure

All.maf: Multiple alignment file of genome alignment of 11 Caenorhabditis nematodes producing by Cactus.

All.wig: Conserved score of genome alignment estimated from maf file by PhastCons.

Csp36_Kikuchi_candidateNonCoding_cneesL10.bed: Summarized bed format file of CNE which is longer than 10 bp using C. niphades as reference.

Result_three_hermaphrodite_NonCoding_L10.out: Results of detection of accelerated evolution in each CNE by PhyloP.