Additional file 5 of Genomic analysis of PLNTY-like tumor progression into epithelioid glioblastoma: a case report

Additional file 5: Table S4. Structural variants detected in both PLNTY-like tumor and three E-GB samples or in all three E-GB samples, but not in PLNTY. Table presents information of the variant location, variant type, gene that variants locate to and quality (variants with QUAL<30 were filtered out). Genotype, number of altered DNA reads (AlleleDepth), total number of DNA reads (Depth), genotype quality (GenotypeQual), likelihood of variant to be real (NormalizedLikelihood, LogOddsREF & LOgOddsReal), spanning reads (NSpanningReads) and discordant read pairs supporting the variant (NDiscordantReads) are also reported in all samples (Germline, E-GB FFPE, E-GB FF, E-GB CL and PLNTY).