Polymorphism and divergence in <i>GOT2</i> in <i>T. californicus</i> populations.

The number of changes inferred via parsimony for nonsynonymous (Fix NS), synonymous (Fix Syn), and intron (Fix Intron) nucleotide changes are given for the branch leading to each population. Changes on branches leading to groups of related populations are also given (e.g. SD/LJS changes would be changes shared by these two populations). Insertion (ins) and deletion (del) events are also given for the intron sequences. Numbers of polymorphisms (Poly) within populations are given for the same categories as divergence, while average pairwise genetic differences within populations are given for synonymous sites alone (1SYN) or synonymous plus intron sites (1NC). Tajima's D (Taj D [52]), Fu and Li's D (F-L D [53]) and F (F-L-F) with outgroups, and Fay and Wu's H (F-W H [54]) are shown. Outgroups for Fu and Li D and F and Fay and Wu's H were the AB (for LJS and SD), SD (for AB), and BC (for SCN and BHB) populations. Finally, significance of Fu and Li's D and F are denoted with an * = P<0.05 (no significant measures were found for Tajima's D or Fay and Wu's H).