Additional file 3 of Highly flexible metabolism of the marine euglenozoan protist Diplonema papillatum

Additional file 3: Table S1. List of enzymes identified in the transcriptome and proteome of D. papillatum. “Predicted localization” in column L summarizes all predicted localizations obtained using an in-house python script and four different tools, three of them in two different settings. Abbreviations used for cellular localization (columns D-L), transcriptomic (columns M-O) and proteomic (columns P-U) data are explained below the table. Values of transcriptomic and proteomic ratios are log2 transformed fold change. ANOVA was performed with Benjamini-Hochberg correction for multiple testing with a pValue threshold at 0.01. For pairwise comparisons, post hoc Tukey’s test was used at p ≤ 0.01. Differentially abundant proteins were filtered on effect size, at least 1-fold of log2 transformed ratio. Abbreviations in column headings: rich medium (R), poor medium (P), aerobic conditions (+) hypoxic conditions (-).