TABLE 1 in Confirming a new species of Amalthea D'Archino & W. A. Nelson (Halymeniales, Rhodophyta) from the mesophotic zone of Hawai'i through taxogenomics
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TABLE 1. — Functional classification of genes in the Amalthea mahilanii F.P.Cabrera & A.R.Sherwood, sp. nov. chloroplast genome. Categories for classification follow Ohta et al. (2003). Genetic systemNumberGenesMaintenance2dnaBrneRNA Polymerase4rpoArpoBrpoC1rpoC2rpoZTranscription factors4ntcAompRrbcRycf29Translation4infBinfCtsftufARibosomal proteinsLarge subunit28rpl1rpl2rpl3rpl4rpl5rpl6rpl9rpl11rpl12rpl13rpl14rpl16rpl18rpl19rpl20rpl21rpl22rpl23rpl24rpl27rpl28rpl29rpl311rpl32rpl33rpl34rpl35rpl3618rps1rps2rps3rps4rps5rps6rps7rps8Small subunitrps9 rps18rps10 rps19rps11rps12rps13rps14rps16rps17TRNA processing1tilSProtein quality control4clpcdnakftsHgroELPhotosystemsPhycobilisomes11apcA cpeAapcB cpeBapcD nblAapcEapcFcpcAcpcBcpcGPhotosystem I13psaApsaBpsaCpsaDpsaEpsaFpsaIpsaJpsaKpsaLpsaMycf3ycf419psbApsbBpsbCpsbDpsbEpsbFpsbHpsbIPhotosystem IIpsbJ psbYpsbK psbZpsbL Psb30psbNpsbTpsbVpsbWpsbXCytochrome complex11ccs1 petLccsA petMpetA petNpetBpetDpetFpetGpetJRedox system7acsFbas1dsbDftrBgrxpbsAtrxAATP synthesisATP synthase9atpAatpBatpDatpEatpFatpGatpHatplclpCsufBsufCMetabolismCarbohydrates5odpAodpBpgmArbcLrbcScbbxLipids5accAaccBaccDacpPfabHNucleotides2carAuppAmino acids8argBgltBilvBilvHsyfBsyhtrpAtrpGCofactors6chllmоеBpreAthiGthiSdfrTransportTransport7cemAsecAsecGsecYycf38ycf63tatCUnknown31ORF58ORF83ORF745ORF101ORF152ycf17ycf19ycf20Conserved ORFsycf21ycf22ycf23ycf33ycf34ycf35ycf36ycf37ycf39ycf41ycf45ycf46ycf52ycf53ycf54ycf55ycf58ycf60ycf62ycf65ycf80ycf86ycf92RNA genesrRNAs3rrn5rrn23rrn1629trnA-UGCtrnC-GCAtrnD-GUCtrnE-UUCtrnF-GAAtrnG-GCCtrnG-UCCtrnH-GUGtRNAstrnI-GAUtrnK-UUUtrnL-CAAtrnL-UAAtrnL-UAGtrnM-CAUtrnM-CAUtrnM-CAUtrnN-GUUtrnP-UGGtrnQ-UUGtrnR-ACGtrnR-CCGtrnR-UCUtrnS-GCUtrnS-UGAtrnT-GGUtrnT-UGUtrnV-GACtrnW-CCAtrnY-GUAMiscellaneous RNAs1rnpB
