meta_data

tblhctmeta.csv: Day and source of hematopoietic cell transplant (HCT) for 1,278 patients PatientID: deidentified identifier of patients TimepointOfTransplant: deidentified day of HCT HCTSource: hematopoietic cell sources for HCT patients (BM_unmodified: bone marrow; PBSC_unmodified: peripheral blood stem cells; TCD: T-cell depleted; cord: cord blood) Disease: disease of patients wbcPatientId, autoFmtPatientId, nejmPatientId: identifiers for the same patients if they were also included in another previous study (wbcPatientId: Schluter, J. et al. 2019. The gut microbiota influences circulatory immune cell dynamics in humans. BioRxiv; autoFmtPatientId: Taur, Y. et al. 2018. Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant. Science Translational Medicine 10(460); nejmPatientId: Peled, J.U. et al. 2020. Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation. New England Journal of Medicine, 382(9), pp.822-834.) tbldrug.csv: Timing and route of drug administration for 1,279 patients PatientID: deidentified identifier of patients StartTimepoint: deidentified day when drug administration started StopTimepoint: deidentified day when drug administration stopped (including the day) Factor: name of the drug Category: category of the drug Route: route of drug administration StartDayRelativeToNearestHCT/StopDayRelativeToNearestHCT: start/stop day of the drug administration relative to the nearest day of bone marrow transplant tblInfectionsCidPapers.csv: Day of positive blood cultures for 426 patients (include only microbes analyzed in 1. Taur, Y., et al. 2012. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. Clinical infectious diseases, 55(7), pp.905-914; 2. Stoma, I., et al. 2020. Compositional flux within the intestinal microbiota and risk for bloodstream infection with gram-negative bacteria. Clinical Infectious Diseases.) PatientID: deidentified identifier of patients Timepoint: deidentified day of infection InfectiousAgent: the bacteria causing infections DayRelativeToNearestHCT: day of infection relative to the nearest day of bone marrow transplant tblwbc.csv: Daily measurements of white blood cells for 1,242 patients PatientID: deidentified ID of patients Timepoint: deidentified day of blood cell measurement BloodCellType: lymphocyte cells (Lymphocytes), neutrophil cells (Neutrophils), and total white blood cells (WBCtotal) Value: blood cell counts (unit: 1,000 cells/uL) DayRelativeToNearestHCT: day of blood cell measurement relative to the nearest day of bone marrow transplant tbltemperature.csv: temperatures for 1,249 patients PatientID: deidentified identifier of patients Timepoint: deidentified day when patient temperature was measured MaxTemperature: Maximum temperature (unit: Fahrenheit) recorded on that day for that patient DayRelativeToNearestHCT: day of temperature measurement relative to the nearest day of bone marrow transplant tblVanA.csv: Results of PCR detection for vanA gene for 7,547 samples SampleID: stool sample identifier VanA: whether vanA gene is detected in the sample