LC-MS/MS and PSM data from "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins"

This dataset contains the data analyzed in: Rodriguez Palomo I, Nair B, Chang Y, Dartigues B, Dekker K, Mackie M, Evans M, Macleod R, Olsen JV, Collins MJ. (2023) "Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins" It contains the following data: raw_files.zip Thermo RAW files for the 0, 4 and 128 days samples benchmark_results.zip PSMs data from the analysis of the RAW files Data from runs in Mascot, Fragpipe, pFind, Metamorpheus, MaxQuant and DeNovoGUI Parameters and workflow files for MaxQuant and Fragpipe