Code for dynamical systems and survival analyses for "Biophysical Mechanisms of Tumor Reversion"

This archive contains Python code used to perform the dynamical systems simulations and survival analyses for the manuscript “Biophysical Mechanisms of Tumor Reversion: A Dynamical Systems Model and In Silico Clinical Evaluation of Membrane Potential Prognostics. The main script generate_all_figures_and_survival_outputs.py reads the processed TCGA-GBM and TCGA-PAAD tables from the companion data archive and reproduces the phase-space plots, membrane potential trajectories, Cox proportional hazards models, and Kaplan–Meier survival curves shown in Figures 1 and 2. A README_code.txt file describes the Python environment (see requirements.txt) and provides instructions for running the full analysis pipeline.