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Supplementary data for: "Sarcomere dynamic instability and stochastic heterogeneity drive robust cardiomyocyte contraction"

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Zenodo2026-01-16 更新2026-05-26 收录
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Data and analysis code for "Sarcomere dynamic instability and stochastic heterogeneity drive robust cardiomyocyte contraction" by Haertter et al., eLife (2026). Reviewed preprint prior to revision: https://doi.org/10.7554/eLife.97321.1. Revised preprint: ttps://www.biorxiv.org/content/10.1101/2024.05.28.596183 This repository contains: • Raw high-speed confocal microscopy movies (66 fps) of hiPSC-derived cardiomyocytes on elastic substrates with varying stiffness (5 kPa to 85 kPa)• Pre-analyzed Line-of-Interest (LOI) data stored as JSON files for rapid reconstruction of analysis results• Complete dataframe ("data_motion.pkl") with aggregated motion analysis results from all movies• Python scripts to unzip LOI data and recreate the results dataframe using SarcAsM Quick Start 1. Install SarcAsM: `pip install sarc-asm`2. Unzip LOI data: `python unzip_data.py`3. Run analysis: Execute the Python code examples in the README.md to analyze individual LOIs or batch-process all movies Contents by Condition 25 representative movies per substrate stiffness condition, each with:- Raw `.tif` movie file (confocal stack time series)- Zipped folder containing pre-analyzed LOI data (JSON format)- Extracted sarcomere trajectories and automated analysis results Documentation Complete analysis workflow documentation is provided in README.md, including step-by-step examples for:- Loading and analyzing individual movies- Performing motion analysis on LOIs- Correlation and heterogeneity analysis- Batch processing and dataframe export For questions, refer to the SarcAsM documentation: https://sarcasm.readthedocs.io/ or contact us.

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2026-01-16
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