Additional file 1 of Glioblastoma-instructed microglia transition to heterogeneous phenotypic states with phagocytic and dendritic cell-like features in patient tumors and patient-derived orthotopic xenografts

Additional file 1: Table S1. Characteristic of PDOX models applied in the study. Table S2. List of antibodies used in the study. Table S3. Characteristics of cell clusters identified in DROP-seq data in mouse-derived TME. Table S4. Lists of differentially expressed genes between PDOXs and nude brain per each major cell type. Table S5. Characteristics of myeloid clusters identified in DROP-seq data. Table S6. Lists of differentially expressed genes between PDOXs, GL261 and their respective normal brain controls (Nu-NB, B6-NB) per each myeloid cell type. Table S7. List of gene signatures applied for scRNA-seq analysis. Table S8. Lists of differentially expressed genes between TMZ treated and control P3 PDOXs per each major cell type analyzed.