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COMEBin metagenomic binning benchmark — archived input datasets (demo, marine, medium, tiny)

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Zenodo2026-10-01 更新2026-10-01 收录
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Archived INPUT datasets of the COMEBin metagenomic binning benchmark, preserved per issue #25 ('archive the other benchmark data in zenodo and remove to get disc space') so their local copies could be deleted. Contents: marine.zip (CAMI II marine official challenge archive, md5 1c054a45f83f6475d50198274823886f); marmgCAMI2_sample_0_{bam,contigs,reads}.tar.gz (CAMI II marine sample-0 BAM, contigs incl. the full binning_gs.tsv ground truth, and reads); marine_sample0_input_release_v1.tar.gz (derived COMEBin input: 41,988 contigs >= 2 kb, bwa-mem BAM, ground-truth subset, built by scripts/prep_cami2_marine.sh); comebin_test_data.zip (COMEBin demo dataset, BATS); comebin_medium_release_v1.tar.gz, comebin_tiny_release_v1.tar.gz, comebin_tiny_101_release_v1.tar.gz (derived medium/tiny functional-test subsets). comebin_small (300 contigs) was archived earlier as 10.5281/zenodo.22935025. All run RESULTS (bin FASTAs, CheckM2/CheckM metrics, AMBER scores, biobox exports) including the marine and demo runs live under the benchmark concept DOI 10.5281/zenodo.22935024. Provenance and per-file md5 sums: docs/01-datasets.md and docs/10-data-preservation.md in https://github.com/paulzierep/metagenomic-binning-benchmark. License note: marine data is from the CAMI II challenge and the demo dataset from the COMEBin authors; archived verbatim for benchmark preservation under CC-BY-4.0 at record level.

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创建时间:
2026-10-01
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