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Figure S1 - The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time—An Ultra-Deep Approach

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https://figshare.com/articles/dataset/The_Evolutionary_Analysis_of_Emerging_Low_Frequency_HIV_1_CXCR4_Using_Variants_through_Time_An_Ultra_Deep_Approach/140027
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Example of frame correction to a dataset specific template and HXB2. Pairwise alignment of the V3 region of the consensus template (patient D, screening) to that of HXB2 (A). Correction of the V3 sequence based on HXB2, and subsequent loss of a complete codon (B). Correction of the V3 sequence based on the data-specific template, and no codon loss (C). (0.46 MB EPS)
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