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atlas_guyane_lauraceae: a small example of input datasets for running yap!

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Recherche Data Gouv France2022-01-01 更新2026-04-09 收录
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atlas_guyane_lauraceae: a small example of input datasets for running yap! Brief description These are three files (fasta, character, yaml) for running simple and short examples of some programs available in barcoding and metabarcoding in following gitlabs: `yap` (see yap gitlab ) `disseq` and `jelly_diskm`(see readme of Disseq project at Disseq gitlab ) What it contains The files consist in: , p> Two files (fasta file and character file) are simple examples of input files for yap! (103 barcodes of trnH-psbA corresponding to Lauraceae family in project Guiana tree , see Guiana tree for more detailed explanation) One file is a yaml configuration file of the study of sample atlas_guyane_lauraceae with yap! (see yap manual) Where it comes from The fasta and character files have been extracted from R-Syst database with Lauraceae as taxon, and sequence length larger than 250 bp. This amounts to 103 barcodes. The yaml file has been written as an example of a yaml file to run yap! on this dataset. It is used in the tutorial of yap!

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2022-01-01
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